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JGI@25: Roots of a Mutualist Relationship
… the fungal portal MycoCosm, many sequenced through the JGI 1000 Fungal Genomes Project.       Francis Martin on the main impact of ectomycorrhizal fungi, excerpted from his talk at the 2015 JGI Annual Meeting:   Francis Martin on how JGI has …
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Annotation of metagenome short reads using proxygenes
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Transcriptional control of Clostridium autoethanogenum using CRISPRi
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… and their JGI mentors are listed below, along with their project focus areas: Undergraduate Interns Andrew Lin and … to work on fungal genomics and the fact that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for …
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Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets
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Polar Phytoplankton Need Zinc to Cope with the Cold
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Science Program (CSP) .  Through this collaboration, in 2017, they published the first genome sequence of a … Program makes genomes and multi-omics data from JGI CSP projects publicly available at the PhycoCosm portal . …
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A One-Stop Shop for Analyzing Algal Genomes
… allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? … genomic data on algae into one place, PhycoCosm allows users to easily compile data that answers what genes are … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Doubling Down on Known Protein Families
… how big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of these communities via whole genome sequencing of the samples, without being able to distinguish which gene …
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Refining the Process of Identifying Algae Biotechnology Candidates
… feedstocks, algae are tiny but mighty. An analysis in the 2017 Bioeconomy Report estimated that the United States has … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… giant. The genomes of giant viruses are on the order of 100 times the size of what has typically been associated … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … could be assigned to viral lineages, and predominantly in samples from marine (55%) and freshwater (40%) environments. …
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SpaRC: scalable sequence clustering using Apache Spark
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Protein structure determination using metagenome sequence data
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