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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
For the first time in several years, the DOE Joint Genome … students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with … and Bishoy Kamel, A Comparative Analysis of Metabolic Pathways in Fungal Pathogens Shayna Bennett and mentor Robert …
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Overview of the Genomes OnLine Database (GOLD)
TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata …
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When “The Blob” Made It Hotter Under the Water
Data from marine heatwave event may foreshadow climate change impact on marine microbial … it in the deep ocean. With genomic samples collected before, during and after The Blob, researchers developed a … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in … also help  prevent flowering, which would enhance the biosafety of genetically engineered trees. Summary The shrub … and songbird species, the system in shrub willow is flipped: females are heterogametic. To avoid confusion with the …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a … don’t engage in the lichen lifestyle. The team’s results appear in  BMC Genomics . To explore the genomes, Armaleo and … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and …
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A Collaboration to Improve Plant Genome Annotations Across Species
… works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently … urea showed nitrogen and amino acid-specific metabolic pathways were overrepresented in the nitrate-subjected plants …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … This type of enrichment could be applied in a number of ways including gathering a more complete view of a …
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Extracting the Secrets of Secondary Metabolites
… secondary metabolites, those molecules not essential for growth yet essential for survival, may now be easier to … be activated in lab environments. CRAGE made some headway in overcoming this obstacle when it hit the scene in … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Clarence Le
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on … joined the SPRUCE team, which aims to predict what might happen to the carbon trapped in the peatlands as the world … and graphics land well with those in the audience, he’s always working to fine tune his approach. “I got a lot of that …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… by a growing human population and increasing demand for agricultural products.  Sorghum bicolor (L.) Moench is … and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … characterizing the mechanisms through which sorghum is equipped to deal with adverse environmental conditions, …
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software … which provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate …
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