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High-Quality Draft Genome Sequences of the Uncultured Delta3 Endosymbiont (Deltaproteobacteria) Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis
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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation
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Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration
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Boosting Small Molecule Production in Super “Soup”
… from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Yeast strains engineered for the … of sustainable chemical products,” said Jewett, one of the study’s senior authors. “But this has been done most … graduate student Blake Rasor. He and Yi, one of the study co-authors, have maintained a regular shipment …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… Newly developed chemiluminescent biosensors shed light on how bacteria function and colonize diverse environments. … interactions with animals and plants, or cause metal corrosion in oil pipes. Scientists have tried to study cyclic di-GMP and cellular networks with fluorescent …
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A One-Stop Shop for Analyzing Algal Genomes
… also analyze gene expression from published experiments; study DNA methylation, which gives clues to how an organism may tune gene expression; and investigate corresponding proteins. PhycoCosm’s built-in connection to … Genomes and Microbiomes (IMG/M) system for microbial and metagenome datasets, MycoCosm for comparative analysis of …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two episodes, we’ve …
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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Polar Phytoplankton Need Zinc to Cope with the Cold
… vitamins; zinc fuels some of their most important functions. Even in the chilly waters of Antarctica, tiny … temperatures characteristic for polar oceans. In this study, they’ve cracked open the genome of another polar … latitudes from pole to pole, using metatranscriptome and metagenome data from the JGI. With multiple threads of …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when it comes to breaking … nitrogen, a key ecosystem nutrient. The Impact This study is the first to dig into a forest floor ecosystem to … able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … Aquatic Science and Technology in September 2021. Robinson stressed that the DNA Synthesis Science team’s expert advice … and her own as an early career researcher. “We were able to study hydrocarbon biosynthesis at a scale that would …
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