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The Capsella rubella genome and the genomic consequences of rapid mating system evolution
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The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
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Comparative genomics and expression levels of hydrophobins from eight mycorrhizal genomes
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The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
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Section-level genome sequencing and comparative genomics of Aspergillus sections Cavernicolus and Usti
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … evolved into a full-scale proposal known as the Brassicales Genome Initiative. Brassicales is represented by more than … sequences from underrepresented green algae groups in a wide range of environments. A similar proposal focused on …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… also collaborated to advance computing infrastructure and analysis. This way, JGI users — both primary, … to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the … Lake Mendota is told as part of a three-part series of our  Genome Insider podcast .    ( Subscribe to Genome Insider …
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SPRUCE-ing Up Science
… one of the first students to participate in the DOE Joint Genome Institute (JGI)-UC Merced internship program, … the inevitable questions about the study’s methods and analysis, Lawrence is spending time on the graphics that … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Doubling Down on Known Protein Families
… of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Research Center  Alexander Fleming. “This was a massive analysis of 1.3 billion proteins with massively parallel … with 8 billion metagenome genes from IMG (the study also references data from the JGI’s  Genomes from Earth’s …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  … to DNA methylation analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & sequencing …
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Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk‐cap (Lactarius) mushrooms
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Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi
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