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JGI@25: From Life at the Extremes to Editing Genomes
… Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and Lawrence Berkeley National … ecosystems around the world, conducting iterative searches using statistical analyses to continuously refine and … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Richard Fox
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex sugarcane genome . The Science Most … successfully assembled a first monoploid reference sequence using a targeted approach that focused on the gene rich part … as well as targeting genes to improve biomass and sugar yield for biofuel production. …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant … plants chromosomes are present in more than two copies, a condition known as polyploidy. The multiple copies arise … arise when different ancestral species crossbreed before genome doubling. In allopolyploids, the set of …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of … LBVaV; genus Varicosavirus ) which may severely reduce crop yields. Like the typical chytrids and other early-diverging … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on … the trees in his backyard. Originally from northern California and one of the first students to participate in the … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Expanding Virophage Diversity
… & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able to … plant rhizosphere, wastewater, and even animal and human (for the first time) gut and taxonomically classified into 27 … address some of the most pressing challenges of our time. For more information, please visit  …
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Gut Fungi: Unexpected Source of Novel Chemicals
… — an energetically expensive feat thought to be too costly for them. The Science Anaerobic fungi, which die in the … the genomes of four anaerobic fungal species has revealed, for the first time, that this group is unexpectedly … source of antibiotics. Indeed, these anaerobic fungi may be using these compounds for self-defense. But the compounds …
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Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons
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Identification of Cellulose-Responsive Bacterial and Fungal Communities in Geographically and Edaphically Different Soils by Using Stable Isotope Probing
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Defining the Boundaries and Characterizing the Landscape of Functional Genome Expression in Vascular Tissues of Populus using Shotgun Proteomics
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Use of Agrobacterium rhizogenes Strain 18r12v and Paromomycin Selection for Transformation of Brachypodium distachyon and Brachypodium sylvaticum
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