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Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential
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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus … than 5,000 data sets of RNA sequences (metatranscriptomes) generated from diverse environmental samples around the … metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… a number of notable achievements that showcase our collaborations and capabilities to enable great science that … that started six years earlier, researchers put together what they called the Hungate1000, a catalog of 410 rumen … aim is identifying chemical compounds that could inhibit microbial methane production. Another effort is in using …
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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. The Science To help better understand … Dubbed “the” bioenergy tree, poplars are known for their genetic diversity. They hold economic value as both biofuel …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… a number of notable achievements that showcase our collaborations and capabilities to enable great science that … contains about 6% of the human genome . They discovered genes linked to conditions such as cardiovascular disease, … with the HudsonAlpha Institute for Biotechnology. Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
Institute (JGI) and University of California (UC), Merced. What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each of them has brought invaluable insights, … “funding and administrative/faculty support so that they can deliver these programs to our students.”   Following …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… shed light on how the JGI was established, all that it has contributed, and what they’re excited about in JGI’s future. … on, from the myriad of omics analyses for understanding gene expression in plants and the environment, to the JGI’s … manager in 2006 when the JGI transitioned from human to microbial genetics. Drell held the role until he retired in …
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JGI Early Career Researchers Featured in mSystems Special Issue
… perspectives on what the next five years of innovation could look like. In one article, Micro-Scale Applications … sequence reads to link mobile elements such as plasmids to microbial host cells. In a separate article, research … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Fungal Endophytes of Populus trichocarpa Alter Host Phenotype, Gene Expression, and Rhizobiome Composition.
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Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi
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Sequence‐Based Introgression Mapping Identifies Candidate White Mold Tolerance Genes in Common Bean
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