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Driving through stop signs: predicting stop codon reassignment improves functional annotation of bacteriophages
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DAS Tool for Genome Reconstruction from Metagenomes
… Opportunity Program (ETOP) , researchers have developed and improved upon a tool that combines existing DNA sequence … been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the efficacy of this … its capacity to tackle metagenomes with low (40 genomes) to high (596 genomes) complexity. The environmental datasets …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … fungi, given that the intricate flagellar apparatus is highly unlikely to regain once it is lost. Depending on the exact phylogenetic placement of Olpidium, it may mean that the …
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Qualitative and quantitative resistances to leaf rust finely mapped within two nucleotide‐binding site leucine‐rich repeat (NBS‐LRR)‐rich genomic regions of chromosome 19 in poplar
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers … access nutrients easily from a variety of soils and has a high tolerance of extreme water conditions such as drought … model species like P. hallii , researchers can develop crop improvement techniques that could be applied to switchgrass. …
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Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant–pathogen interactions in a tree
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Mapping the membrane proteome of anaerobic gut fungi identifies a wealth of carbohydrate binding proteins and transporters
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The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
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Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics
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Functional Metagenomics of Spacecraft Assembly Cleanrooms: Presence of Virulence Factors Associated with Human Pathogens
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Ecological Assembly Processes Are Coordinated between Bacterial and Viral Communities in Fractured Shale Ecosystems
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. … well as secondary, data-downloading users — have access to high-quality, assembled datasets from all of this … are at the core of many environmental processes, and their genetic makeup forms the basis of their behavior in the …
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