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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … National Laboratory – jointly the Nobel Prize in Chemistry with Emmanuelle Charpentier of the Max Planck Institute! … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Building Sphagnum Genomic Resources
… Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather … These resources would provide the research community with the ability to address questions such as sphagnum’s …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in … for the first time. For years, Elizabeth (Toby) Kellogg and other researchers at the Danforth Plant Science Center … was green millet (Setaria viridis), a small model grass with a short lifecycle that uses a carbon fixation process …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and … a resource that associates plant’s genetic variants with specific adaptation mechanisms they had identified. For … in Marchantia and later plant lineages that independently expanded. Along with NLRs, the diversified peroxidases are …
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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett Baker’s lab at the … laboratories or national user facilities. Baker had worked with the JGI through a Community Science Program (CSP) … I wanted to incorporate that CSP, but also look at how viruses might be influencing the methane cycling within …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… archaeal lineage found in Yellowstone may have been important in early Earth conditions. The Science Through a combination of sequencing tools and techniques applied to samples … and characterized a novel phylum-level lineage of archaea with at least two major subgroups dubbed Marsarchaeota. The …
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Natural Prodcast Episode 9: Roger Linington
… DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … in making this happen. We had a really fun conversation with Roger about all this, in terms of how to build an … Episode Transcript … This episode features our conversation with Roger Linington , from Simon Fraser University . Roger …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors who participated … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates …
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Understanding Wildfire Recovery, Starting in Soil
… a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for … a USDA NIFA award (2021-67019-34608) to M.J.W. FTICR-MS analyses were performed under the Facilities Integrating …
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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is … (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the … of the JGI is to provide the global research community with access to the most advanced integrative genome science …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called methanogenesis. … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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