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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how … regulation determines when and where genes are activated to sustain life’s processes.  Traditionally, mapping this … traits. One key discovery relates to conservation scores, which measure how well transcription factor binding …
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MGM Workshop at Fisabio Summer School
… Genomics & Metagenomics Workshop The workshop is addressed to students and professionals of biology, biomedical research, the health … research results in genomics, metagenomics and the human microbiome. The workshop will train participants in …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … that showcase our collaborations and capabilities to enable great science that will help solve energy and … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Workforce Development & Education Outreach
… Outreach at JGI takes many forms: We offer internship opportunities through working directly with … with the Berkeley Lab A-LIFT team.    Overall, our aim is to inspire students and established professionals to explore opportunities in STEM by providing hands-on …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by … Grant P01 GM-068087 “Functional Analysis of a Model Filamentous Fungus” and that are publicly available at the Fungal …
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JGI at the AGU Fall Meeting
… Register for the meeting here. Here are some sessions of interest (all times in PST unless otherwise noted): December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating …  : Maggie Bowman, PNNL: “EMSL’s 1000 Soils Project: core collection strategy and data types available” December …
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Streamlining Regulon Identification in Bacteria
… technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … each gene. These bacterial RNA polymerases are made up of a core enzyme complex as well as a sigma factor. While all …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… This is the third and final episode of our series on a giant metagenome assembly from … In the last two episodes, we’ve covered the specialized software and supercomputers behind this project. But every part of this project depends on lakewater samples — so this …
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Insights into the phylogeny and coding potential of microbial dark matter
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Evolutionary instability of CUG-Leu in the genetic code of budding yeasts
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Development of a thermophilic coculture for corn fiber conversion to ethanol
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