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Examples: Successful LOIs & Submissions
Learn more
A More Intuitive Phytozome Interface
… website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for over 5 … building high performance user interfaces and backend data systems. Trying to maintain v12’s codebase and legacy data …
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Integrating Experimentation with Data
… Environmental Microbiomes Biodesign and Synthetic Biology AI/ML-enabled Laboratory Automation, Data … worldwide to explore complex biological and environmental systems using advanced experimental and informatic tools at …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. … underestimated.” In the March 4, 2019, issue of Nature Microbiology , they mined the Integrated Microbial Genomes & … With the help of this information, the researchers found evolutionary relationships between methanogenesis, …
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An Integrated Dataset to Understand Ecosystem Interaction
… partners. The Science To help better understand how ecosystems work and how healthy they are, a recent data set  … sequestration. Poplar trees grow quickly in a variety of ecosystems and contribute to stabilizing streambanks, wildlife … (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… plant’s traits and genetic diversity,” said John Lovell, an evolutionary biologist at HudsonAlpha and first author of … across the chromosomes. “In the past, we needed model systems to test genetic hypotheses in species with large and complex genomes,” said Lovell. “However, new sequencing technologies …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Program , sequences of several hundred green millet plant genomes were generated, though the final analyses focused on … Schmutz and his team assembled and annotated the genomes at HudsonAlpha. Sujan Mamidi and Adam Healey, two of … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… collaborations in the fields of genomics, structural biology, bioimaging, and water research. The meeting … discussed a diverse range of topics related to structural biology, single cell and systems biology, omics, and big data science, machine … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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JGI Scientists Pen Genome Watch Articles
… made their debut writing for the Nature Reviews Microbiology column last year — and there’s more to come in 2020. … writing for the column Genome Watch in  Nature Reviews Microbiology .  The latest article, published January 27, is … move toward characterizing the human microbiome  by its genomes and metagenome , rather than just by 16S ribosomal …
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Rex Malmstrom
… genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … liquid transfer and microfluidics, to minimize molecular biology reactions, increase throughput, and enable … Ph.D. in Marine Biology/Biochemistry, University of Delaware BA in Biology, …
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MGM Workshop at Fisabio Summer School 2025
… The workshop is addressed to students and professionals of biology, biomedical research, the health sciences and … devoted to training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by Natalia …
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Better Genome Editing for Bioenergy
… lipid production. These insights into  Y. lipolytica biology and lipid metabolism furthers the U.S. Department of …
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