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Calculating the Costs of Multiple Switchgrass Gene Copies
… of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of … natural sampling and field experiments due to its potential for habitat restoration and as a feedstock for biomass-based biofuel production. As seen with many …
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Emiley Eloe-Fadrosh
… samples to identify and characterize genomic information from uncultivated microbes and viruses. Prior to joining the JGI, she was a Bioinformatics Program Fellow at the Gordon and Betty Moore Foundation as part of the Marine Microbiology Initiative. She conducted her postdoctoral training …
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JGI@25: Studying Sorghum’s Survival Skills
… challenges. Sorghum stands out as a candidate feedstock for biofuels thanks to its drought and flood hardiness. Even … sugars and oxygen. Both sugarcane and corn share this photosynthetic pathway. However, neither crop shares sorghum’s … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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UC Merced Interns Reflect on Their JGI Summer Projects
… language processing techniques to categorize genetic information. Learn more about their work here in a series of … virtual events and technology enabled a fruitful experience for mentors and students alike. Tools like Slack, Google … career in genomics, and to help foster a diverse future workforce in science. Since the program’s inception, more than …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… food webs on Earth. And at their base are microscopic, photosynthetic algae. But human-induced climate change , a new … organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for ‘wanderer’). But they vary across the global ocean. … address some of the most pressing challenges of our time. For more information, please visit  …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the … address some of the most pressing challenges of our time. For more information, please visit  …
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How Maize Makes An Antibiotic Cocktail
… revealed that just a handful of enzymes are needed to transform zealexins and related precursors into a bonanza of … the protective function of zealexins and related compounds for other plants, including those cultivated for bioenergy. … could produce at least 15 zealexins. Moreover, zealexin biosynthetic enzymes would also act on native substrates to …
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Virus-Microbe Interactions of Mud Island Mangroves
… the SCGSR research experience was “an ideal opportunity for me to get real-world experience.” As he finalizes his … as a computational biologist. My primary future goal is to form a startup.” …
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Simon Roux
… link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts in the field of viral ecogenomics. For this role, Dr. Roux can rely on more than 10 years of … Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France Ph.D. in …
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Supporting Global Research into Actinomycetes
… The 500 species described within the group are responsible for roughly two-thirds of antibiotics, and a deeper … key to discovering new antiviral medicines and treatments for infectious disease. Streptomycetes are also abundant in … It is the largest genus within Actinobacteria and therefore a cornerstone of ActinoBase,  a public platform built …
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John Vogel
… he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development of numerous genomic resources … of Brachypodium distachyon as an experimental model for the grasses. In addition to this fundamental work, he …
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A More Intuitive Phytozome Interface
… of 250 plant genomes and has been under active development for over 5 years, provides users with the genome browsers, … attempted to make sure users will continue to have straightforward access to all the data in Phytozome v12, and that … bookmarked v12 links (e.g., to gene reports and organism information pages) will be seamlessly forwarded to Phytozome …
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