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Horizontal gene transfer in Histophilus somni and its role in the evolution of pathogenic strain 2336, as determined by comparative genomic analyses
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Cultivation of novel Atribacterota from oil well provides new insight into their diversity, ecology, and evolution in anoxic, carbon-rich environments
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and … technical JGI directions for DOE User science. … Complete Publications Genomic Technologies Program Defining the vast … of Human Genomics, Sanger Center 2011-  Co-Organizer “Systems Biology of Gene Regulation and Genome Editing,” Cold …
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DOE Metrics
… % Goal FY 2025 Total 700.0     8,585     Q1 2025 175 190.304 109% 2,164 2,136 98.7% Q2 2025 175 152.100 87% 2,117 2,112 99.8% Q3 2025 … to planned upgrade of the Laboratory Information Management System (LIMS) and temporary shut down of the sequencing …
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Finding the Fermenters
… researchers recently compiled a list of with more than 8,300 organisms from multiple sources, including the U.S. … Berkeley National Laboratory (Berkeley Lab), and the DOE Systems Biology Knowledgebase (KBase). They also built an … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … and the JGI. Building off this work, researchers at three DOE Bioenergy Research Centers (BRCs) have expanded … As well as the seminal Human Genome Project DOE Chromosome publications: The DNA sequence and biology of human …
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Genome analysis of ‘Candidatus Ancillula trichonymphae’, first representative of a deep‐branching clade of Bifidobacteriales, strengthens evidence for convergent evolution in flagellate endosymbionts
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A chromosome‐scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus
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Directed Evolution of Flavin-Dependent Halogenases for Site- and Atroposelective Halogenation of 3‑Aryl-4(3H)‑Quinazolinones via Kinetic or Dynamic Kinetic Resolution
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JGI Earth Month: Wetlands Work in #TenHundredWords
… , JGI’s User Programs deputy and head of the Microbial Systems group through the  DOE Office of Science Graduate … Structure and Methane Production in California’s Canal System,” focuses on anthropogenic impacts on wetland … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… (Berkeley Lab) and the Laboratory for Research in Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, … took on the challenge to visualize these giant cells in three dimensions and at relatively high magnification. Using … the new organelles named pepins played a role in the evolution of the Thiomargarita magnifica extreme size, and …
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Eelgrass Proves to Be Much Younger Than We Thought
… its history. Their research, published in  August 2023 in  Nature Plants , was able to assess absolute time … to providing a more detailed timeline of eelgrass’s evolution, the study also shows the younger meadows in the … Sequencing Program (CSP 502951, 2016, Population and evolutionary genomics of host–microbiome interactions in …
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