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The fungus that made itself at home
… Serpula lacrymans adapted to a new ecological habitat. The Science By comparing genetic information from similar … environments. As reported January 5, 2018 in The ISME Journal , a team led by University of Oslo scientists and including researchers at the Joint Genome …
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Russulaceae: a new genomic dataset to study ecosystem function and evolutionary diversification of ectomycorrhizal fungi with their tree associates
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Defining the Boundaries and Characterizing the Landscape of Functional Genome Expression in Vascular Tissues of Populus using Shotgun Proteomics
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Functional Gene Losses Occur with Minimal Size Reduction in the Plastid Genome of the Parasitic Liverwort Aneura mirabilis
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An RNA ligase partner for the prokaryotic protein-only RNase P: insights into the functional diversity of RNase P from genome mining
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… DOE Joint Genome Institute and the Environmental Molecular Sciences Laboratory hosted a webinar to showcase how researchers can gain access to the Advanced Photon Source (APS) at Argonne National Laboratory when applying to the FY2024 EMSL-JGI FICUS collaborative proposal call . Letters of Intent …
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Crysten Blaby-Haas
… Dr. Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials … engineering. She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in bacteria and leveraging …
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Building Wet and Dry Lab Skills
… worked with mentors Yi Zhai and John Vogel from the Plant Functional Genomics Group to study the effects of  … on to Dori – a computer cluster owned and operated by the JGI and Berkeley Lab – to launch a jupyter notebook running … about how to analyze data. Zyiah Mikes : Dr. Yi Zhai is our mentor for our experimental work or our wet lab stuff. …
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Triggering Morel Fruiting
… led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis Martin from the … is triggered when nutrients are acquired from an external source.  The work is part of the JGI’s 1000 Fungal Genomes … and his patent has proven difficult to reproduce. While scientists and biotechnological engineers all over the world …
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iPHoP: A Matchmaker for Phages and their Hosts
… computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do … described in Plos Biology , the research team led by scientists at the U.S. Department of Energy Joint Genome … pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory … recognition: for example, a camera’s ability to recognize your face and distinguish it from your friend’s. Biologists … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of …
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The More the Merrier: Making the Case for Plant Pan-genomes
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … these datasets, researchers made a pan-genome containing four  B. hybridum  genomes and many  B. distachyon genomes. …
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