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First Monoploid Reference Sequence of Sugarcane
… a reference for the highly complex sugarcane genome . The Science Most species are diploids and have two sets of … breeding in these crops. For diploid species, sequencing programs generally focus on a genotype with two identical … crop that very efficiently converts solar energy into plant biomass, which can then be crushed to extract the …
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Training the Next Generation of Talent
… of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus … a part of the students’ thesis,” she says. “Second, we want our students to gain the opportunity to see what research is … that would allow users to simultaneously run several programs for RNA-Seq assembly to determine which is best for …
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Len Pennacchio
… and capabilities we offer JGI users to help advance their science. … a vision for future technical JGI directions for DOE User science. … of Regents Working Group on “NIH Comparative Genomics Resource” 2021-  Co-Chair, “Advances in Genome Biology & … Fellow of the American Association for the Advancement of Science (AAAS) 2020- National Advisory Council, National …
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Mapping the Earth’s Hidden Fungal Kingdom
… past billion years, fungi have spread quietly throughout our planet. From the deepest ocean floors to Antarctic … estimated 2–6 million species — dwarfing the diversity of plants. To put this evolutionary timescale in perspective, … (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program and JGI users have been at the forefront of …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… to Africa to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint … for the accepted proposals, said Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize poorly-studied algal and viral …
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Programmed DNA destruction by miniature CRISPR-Cas14 enzymes
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… to host some of the brightest minds in genetics as part of our  2022 Annual Meeting . The meeting was a hybrid event, … made possible by CRISPR-Cas9; the Weizmann Institute of Science’s Assaf Vardi, who delved into algae blooms and the … Variation — From McClintock to Pangenomes Susan Wessler is plant molecular biologist and geneticist and currently a …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… DOE Joint Genome Institute and the Environmental Molecular Sciences Laboratory hosted a webinar to showcase how researchers can gain access to the Advanced Photon Source (APS) at Argonne National Laboratory when applying to … The FICUS call allows researchers to combine the power of genomics and molecular characterization from the JGI and …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute … separation to library sequencing and assembly. Like others, our turnaround time has been impacted by the pandemic. 3. Q: … 8. Q:  Related to Jim Moran’s talk, how long do plants need to be placed in a 13 CO2 chamber for sufficient …
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Graduate Students Get Thesis Research Opportunity at the JGI
… Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program awards … mission areas across the 6 Office of Science research programs. Among the recipients of the latest SCGSR award is … are developing cutting edge technologies to answer our most pressing problems. I’m very much looking forward to …
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown‐rot mechanism involving Fenton chemistry
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