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Simon Roux
… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, the design of new experimental approaches to link viruses to their … Life Sciences, Université Blaise Pascal, France Ph.D. in Bioinformatics, Ecology and Evolutionary Biology, Université …
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Enzymatic Adaptation of Podospora anserina to Different Plant Biomass Provides Leads to Optimized Commercial Enzyme Cocktails
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Transgenic Expression of the Dicotyledonous Pattern Recognition Receptor EFR in Rice Leads to Ligand-Dependent Activation of Defense Responses
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Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters
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JGIota: A Surprise for Chloroflexota — The First Flagella!
… Hear how their recent work revealed more about the history of the Chloroflexota phylum and a new way of moving: a tail-like flagella.  …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the … this Lawrence Berkeley National Laboratory (Berkeley Lab) Newscenter story and this piece in  Current Opinion in … Instead of only accommodating one DNA insertion, the new system, CRAGE-Duet, can accommodate two DNA constructs, …
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Improving the Cacao Genome and Phytozome
… fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest buyers of cocoa, is collaborating with others to develop healthier … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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JGIota: Looking Back at Methane-Making Microbes
… and wool. Hear more from JGI collaborators Sinead Leahy (New Zealand Agricultural Greenhouse Gas Research Centre) and …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students coming to the DOE Joint … on the plant microbiome. This year, however, there was a new aspect to the project - they also worked with Sharon … really good at it. Tamyra Long : I feel like I opened a new level of confidence because coming here in the …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the “chytrids”).  A collaborative team … to the terrestrial ecosystems exposed fungi to numerous new ecological niches and triggered rapid diversification of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, land plant evolution. … associated genes are great resources for bioremediation, new agricultural applications or life-saving drugs. A better … The work conducted by the US Department of Energy Joint Genome Institute is supported by the Office …
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Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7
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