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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental samples. The … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone science presentation …
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements … metagenomics studies. The Science Researchers demonstrated the value of conducting large-scale single cell … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) participants. One … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and …
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Ancient Algae Reveal Secrets of Plant Evolution
Research uncovers the genetic foundations that helped plants conquer land over 600 million … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … research and innovation program (grant agreement no. 852725; ERC-StG ‘TerreStriAL’). The work was further supported …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
P. psychrophila genes drive resilience when salinity fluctuates. The Science The Arctic microalga Plocamiomonas … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of Canada-Compute Canada facilities. The work (10.46936/10.25585/60001017) conducted by the U.S. Department of Energy …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, land plant evolution. Recent findings in Ceratopteris richardii show a long history of dynamic evolution … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers focused on the full … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … … The work (proposal: award at  https://doi.org/10.46936/10.25585/60001405 ) conducted by the US Department of Energy …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … to J.F.B.). The work ( proposal doi: 10.46936/10.25585/60000800 ) conducted by the U.S. Department of Energy …
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Supercharging SIP in the Fungal Hyphosphere
… and fungi The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … HT-SIP is a capability available to request through  the JGI proposal calls . … Work at Lawrence Livermore National …
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W. Berkeley Kauffman
… user samples. His R&D work focuses on the development of new applications utilizing a variety of technologies to improve the JGI’s capabilities in the areas of metagenomics, …
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