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Adopt-A-Genome
… (JGI) and Matt Escobar (California State San Marcos) about how the Adopt-A-Genome project got started. Plus, Kalyani … Angela and Mark Soghomonian share what it was like to take on one of these genomes.  …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Ancient Algae Reveal Secrets of Plant Evolution
… the genes of land plants’ closest algal relative,  Zygnematophyceae , scientists have enhanced our understanding of how early plants transitioned from water to land. Key gene … existed in close algal relatives  to terrestrial plants showcases how early plants built upon an ancient genetic …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
Though visible to the naked eye, microscopy reveals unexpected complexity … interactions, because large sulfur bacteria have been shown to be hot spots for symbionts,” Woyke said. “Yet the … “This project has been a nice opportunity to demonstrate how complexity has evolved in some of the simplest …
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Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park
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An Automated Tool for Assessing Virus Data Quality
… and identified from environmental samples (metagenomes). However, the quality and completeness of … have now developed CheckV (pronounced “Check-Vee”) to help researchers assess and improve the quality of metagenome-assembled viral genomes . The Impact The microbes that play key roles in cycling nutrients such as …
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The Busy World of Deep Sea Eruptions
… researchers Anna-Louise Reysenbach, Emily St. John, Gilberto Flores, and Peter Girguis about sampling these communities, and understanding how they’ve adapted to this extreme environment.   …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The … components that make it useful for scientific inquiry: it shows a full phylogenetic tree of more than 100 sequenced … an organism may tune gene expression; and investigate corresponding proteins. PhycoCosm’s built-in connection to the …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The … components that make it useful for scientific inquiry: it shows a full phylogenetic tree of more than 100 sequenced … an organism may tune gene expression; and investigate corresponding proteins. PhycoCosm’s built-in connection to the …
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Accelerating Metagenomics Discoveries with Deep Learning
On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared their … difficult to assemble and interpret. The workshop aimed to showcase how researchers are utilizing deep learning to automatically …
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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Pinning Down a Piece of Photosynthesis
… a cyanobacterial protein, researchers have new insights into how these ocean photosynthesizers cycle carbon in changing … they turn carbon dioxide and water into oxygen and sugars. How photosynthesis works, though, is much harder to pin …
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