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JGI@25: Building a Better Bean
… to their economies. It also plays an important role in soil health through nitrogen-fixation and holds clues for … of the University of Georgia sequenced and analyzed the genome of the common bean. That work was published online … Traditionally beans have had a shelf-life about roughly 6-9 months before their color begins to darken. Called …
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Single Cell Research Group
Anomaly” first described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying … of the genus Streptomyces. Sci Rep. 2022 Nov 7;12(1):18909. Otani H, Mouncey NJ. RIViT-seq enables systematic … Characterization of p-hydroxycinnamate catabolism in a soil Actinobacterium. J. Bacteriol. 196, 4293-4303. Otani, …
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Effects of sample treatments on genome recovery via single-cell genomics
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Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes
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Rex Malmstrom
… genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … hyphosphere of arbuscular mycorrhizal fungi. Microbiome 199 Needham, D.M. et al. 2019. A distinct lineage of giant … Couradeau, J.S. et al. 2019. Probing the active fraction of soil microbiomes using BONCAT-FACS.  Nature Comm 10(1) 1-10 …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), … 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each of them has … helped her in her role at the Lab as well.  One of the 2015 program alumnus Cristhian Gutierrez discussed how his time …
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The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
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Comparative genomics and expression levels of hydrophobins from eight mycorrhizal genomes
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The Capsella rubella genome and the genomic consequences of rapid mating system evolution
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The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
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Genome Analysis of a Verrucomicrobial Endosymbiont With a Tiny Genome Discovered in an Antarctic Lake
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