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Accelerating Metagenomics Discoveries with Deep Learning
Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to harness deep … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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JGIota: The Algae Nicknamed ‘Chlamy’
This shorter episode is about a tiny, single-celled alga – Chlamydomonas reinhardtii … managed to sequence its genome, and what it has to teach us about other organisms – like plants. [ Editor’s Note: …
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Oryzisolibacter propanilivorax gen. nov., sp. nov., a propanil-degrading bacterium
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Proposal of Patescibacterium danicum gen. Nov., sp. nov. in the ubiquitous ultrasmall bacterial phylum Patescibacteriota phyl. Nov
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Building Sphagnum Genomic Resources
… carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are … decomposed matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high … These resources would provide the research community with the ability to address questions such as sphagnum’s …
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Refining the Process of Identifying Algae Biotechnology Candidates
… seems fairly simple: place these algae in a container with access to sunlight, water and carbon dioxide so they … feedstocks that can thrive in saltwater mitigates concerns about diverting resources such as arable land and fresh … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Fungal Friends or Foes in Plant Roots
… genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their … fungi can form such symbiotic partnerships. To learn more about these other plant-fungal relationships, an … Regional Development Fund, and the Plant–Microbe Interfaces Scientific Focus Area in the Genomic Science Program, the …
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From Competition to Cooperation
… independently evolved to establish symbiotic relationships with plants (mycorrhizae), and particularly how fungi that … in moving toward functional genomics studies to learn more about the inner workings of plant-host and … Regional Development Fund and the Plant-Microbe Interfaces Scientific Focus Area in the Genomic Science Program, the …
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Medium-Chain Fatty Acid Synthesis by “Candidatus Weimeria bifida” gen. nov., sp. nov., and “Candidatus Pseudoramibacter fermentans” sp. nov.
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… enzyme family evolved across 90 species. “One unique thing about this work was our focus on all the kingdoms, including … National Laboratory (Berkeley Lab). He completed this work with collaborators at the University of Wisconsin-Madison as … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria … Ocean have found that in winter months, when sunlight is nonexistent, the bacteria are replaced by carbon-fixing … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published …
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