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Methane Cycling Microbial Community Characteristics: Comparing Natural, Actively Extracted, Restored and Unrestored Boreal Peatlands
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Nick Everson
… Institute and the Operations Deputy for LBNL’s Biological Systems & Engineering Division. Prior to his tenure with Berkeley Lab, …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… production. Also notable, researchers found it is missing 33 genes thought essential for photosynthesis, yet still … understanding of genome biology, and develop genome-scale engineering technologies to control plants and microbes for … applications. Engineers could manipulate these natural systems to tune gene activity without permanently altering …
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Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… standard conditions. As described in a recent issue of mSystems , scientists found that adding salt to the growth … provides a blueprint that engineers can use to design more efficient microbial factories. Identifying specific genes, … these gene clusters, offering new regulatory targets for engineering efforts. Importantly, several of the activated …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… ocean-dwellers called phytoplankton play an outsize role in cycling carbon and nutrients. These microscopic algae have managed … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… of viruses impact many ecological processes, including carbon cycles. “Whether or not you planned it, viruses are most likely in your system and in your data, and they’re probably influencing … from different ecosystems all over the world, including 3,908 isolate reference DNA viruses and 264,413 …
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The metagenome of the marine anammox bacterium ‘Candidatus Scalindua profunda’ illustrates the versatility of this globally important nitrogen cycle bacterium
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Restoring wetlands on intensive agricultural lands modifies nitrogen cycling microbial communities and reduces N2O production potential
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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days
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Fishing for Novel Cellulose Degraders
… learn more about what microbes are present in any given ecosystem—particularly those that are in low abundances—and … Facility, is supported under Contract No. DE-AC02-05CH11231. The work was supported by a JGI Director’s Science … program (LDRD) entitled ‘Tackling microbial-mediated plant carbon decomposition using “function-driven” genomics’. …
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Webinar: PhycoCosm Tutorial
… to publish the tree or their parts and data it is based on 3.  Q(uestion): Can you please explain again how did you … model with PhycoCosm, how do we go about getting it in your system? A: I think the best way is to contact us for … as we want to support you in getting these data on our system. If it’s not based on the gene model, that should be …
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