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Accelerating Metagenomics Discoveries with Deep Learning
… a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
On July 30, UC Merced students and their JGI mentors toasted to the end of a nine-week virtual internship. The celebration was preceded by short final presentations attended by …
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Ronald de Vries
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Alabama Agricultural & Mechanical University Internship Program
… 2024 was a year of first, including the flagship internship … California honing their scientific skills and collaborating with their mentors and fellow interns. Inspired by the … success of the UC Merced internship program, they left the JGI more confident and ready to tackle real-world scientific …
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Ian Blaby
Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint Genome … biology and functional genomics. Prior to joining the JGI, he was a group lead at Brookhaven National Laboratory … Chlamydomonas genome project: a decade on. Trends in plant science . 19: 10, 672-680. 2014 Blaby, et. al., …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and impactful …
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A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
The Berkeley Lab Biosciences Area Entrepreneurship Program presents… Eyes on the … (Cyclotron Road company) Hosted by Nigel Mouncey, Director, DOE Joint Genome Institute Read a synthesis from the panel … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and … and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, … the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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Micro-Scale Applications Group
The Micro-Scale Applications group explores the genetic makeup of natural … information with individual cells. Research Team    … The JGI uniquely offers the first quantitative Stable Isotope … such as, “who is eating what?” and “who is active? … The JGI provides users access to cutting-edge cell sorting, DNA …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the … on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing novel methods for enabling …
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