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Taking Stock of the Known and Unknown Microbial Space
… to the global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of the current state of microbial genomic biodiversity. Using publicly available genome sequence data generated over …
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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Access to Rock Star Scientists
Paropkari, Vicente Ramirez and Rhondene Wint had summer 2018 internships in Walnut Creek. The students’ research … so nice and helpful.”     Mo Kaze, UC Merced JGI Mentor : Susannah Tringe, Microbial Systems Group “Everyone here is … their work. It’s fun to be around people who are generous with their time and like nerding out about the big stuff, …
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JGI & KBase at PAG XXVII
Animal Genome XXVII Conference (PAG) takes place January 12-16, 2019, in San Diego, Calif. Representatives from … with the JGI Community Science Program, and how you can use the KBase system to accelerate your plant genomics … to BER-funded activities of plant systems that make use of these resources will present on their work. BER Plant …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… .) This plan aligns the DOE Office of Science user facility with broader national efforts to promote and … of biological systems. The JGI strategic plan lays out how users and the global research community will bridge … for the next five years. It also includes more than 130 implementation milestones to help track and drive …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  … is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI has established a portfolio of microbial …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… will help solve energy and environmental challenges. Viruses are everywhere — in soil, the sea and, of course, the … microbes like bacteria, algae and protists, all kinds of viruses impact many ecological processes, including carbon … to boost understanding of environmental viruses. In 2016, Nikos Kyrpides at the JGI led a team that combed …
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JGI Announces 2023 Community Science Program Awardees
Congratulations to the proposers of the 19 proposals selected for the 2023 Community Science Program … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … PIs on a JGI proposal,” said Tanja Woyke , JGI’s deputy of User Programs. “The proposed research by these PIs will …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s climate. Most methane is produced … interest for their potential contributions to a sustainable bioeconomy, including, potentially, methane as an …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) … Program, and coordinates the development of the virus and plasmid workflows for the National Microbiome Data … and functionally explore viral genetic diversity.  In 2021, he was among those selected by the DOE Office of Science …
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JGI at the AGU Fall Meeting
… (all times in PST unless otherwise noted): December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating research and tips for … successful proposals: Collaborate With a U.S. DOE User Facility: Learn About Available Expertise and …
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Integrating Experimentation with Data
… data integration and modeling This three-day joint user meeting will feature insightful presentations, dynamic panel discussions, informative poster sessions, thought-provoking … workshops. Researchers from academia, government, and industry, are invited. Check back for more details and …
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