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Evolution of a multi‐step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer‐binding protein triggers acid‐activated gene expression
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Training the Next Generation of Talent
… as a first-year graduate student in the Quantitative Systems Biology (QSB) Group under the School of Natural Sciences … of a genome that contains transcribed instructions for building and maintaining cells through the use of …
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The Power of One, Amplified
… that were missed within paired metagenome assembled genomes (MAGs), and that dominant populations varied with … the vast majority in, on, and around the planet remain unknown. In recent years, advances in sequencing technologies and bioinformatic tools …
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A Complex Confection Decoded: Sugarcane Reference Genome
… crop breeders can use to improve sugarcane varieties and advance a sustainable bioeconomy. Researchers and farmers … .   … The work (proposal: https://doi.org/10.46936/10.25585/60001084 and https://doi.org/10.46936/10.25585/60001194) conducted by the USA Department of Energy (DOE) …
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Understanding Wildfire Recovery, Starting in Soil
… within the soil. To get a clearer picture of how burned ecosystems return to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By connecting …
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JGI Scientists Pen Genome Watch Articles
… made their debut writing for the Nature Reviews Microbiology column last year — and there’s more to come in 2020. … move toward characterizing the human microbiome  by its genomes and metagenome , rather than just by 16S ribosomal … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… and data workflows and management best practices that have advanced the microbial sciences. The Prize also recognizes … viral diversity, understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity.  …
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MGM Workshop at Fisabio Summer School 2025
The workshop is addressed to students and professionals of biology, biomedical research, the health sciences and … devoted to training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by Natalia …
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Marine Microbe Contains Multitudes
… their gene expression, the team then sequenced community genomes and expressed gene transcripts (metagenomes, metatranscriptomes), as well as the genomes of … this project wouldn’t have been possible. Scientists hadn’t known that SAR324 encompassed these different ecotypes …
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Introducing New Members of the JGI User Executive Committee
Pawlowska, who studies fungal-bacterial symbiotic systems, noted that she would like to help advance JGI efforts aimed at “understanding complex …
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Maureen Berg
… our understanding of the roles that viruses play in their ecosystems, particularly in freshwater ecosystems. …
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Genome Sequences of Alicycliphilus denitrificans Strains BC and K601T
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