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An Integrated Dataset to Understand Ecosystem Interaction
… researchers came from two environments: natural forests and plantations managed through human intervention. By … (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic profiles — combined … BioScales project on JGI Genomes Online Database …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… nearly 10,000 new annotations of fungal mitochondrial genomes — the DNA found inside mitochondria, the … mitochondrial annotations. Summary Mitochondrial genomes carry the genes responsible for oxidative … complex cells. Despite their biological importance, these genomes have resisted large-scale automated annotation due …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… that crop varieties grow best in certain regions. Most plant species have adapted to their local environments; for … basketball star LeBron James. In each garden, switchgrass plants clonally propagated from cuttings represent a diverse … test genetic hypotheses in species with large and complex genomes,” said Lovell. “However, new sequencing technologies …
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JGI User Executive Committee Expands
… Baxter is a principal investigator at the Donald Danforth Plant Science Center, where his group focuses on interactions underlying plant adaptation in different environments. He’s been … decomposition. She’s also participated in the 1000 Fungal Genomes Project and has an interest in cross-disciplinary …
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Building Wet and Dry Lab Skills
… Mikes worked with mentors Yi Zhai and John Vogel from the Plant Functional Genomics Group to study the effects of  Brachypodium distachyon plant root exudates on the plant microbiome. This year, however, there was a new aspect …
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Advantages and Limits of Metagenomic Assembly and Binning of a Giant Virus
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Cryptic cycling by electroactive bacterioplankton in Trout Bog Lake.
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Triggering Morel Fruiting
… external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information … carbon from lignocellulosic-abundant matters such as plant litter and to incorporate the assimilated carbon into … assistance from co-habitant microorganisms were unmasked. Plant polysaccharides such as starch and cellulose were …
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JGI@25: Roots of a Mutualist Relationship
… (INRAE). Today, there are nearly 200 mycorrhizal fungal genomes publicly available on the fungal portal MycoCosm, many sequenced through the JGI 1000 Fungal Genomes Project.       Francis Martin on the main impact of …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… Todd Anderson currently works to support understanding of plants, microbes and environmental communities that have … of omics analyses for understanding gene expression in plants and the environment, to the JGI’s forging new … small, easier to deal with and before they grow into big headaches.” He reminisced over the building of the …
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… for a steadily growing worldwide population. Anuvia Plant Nutrients , a small Florida business producing bio-based plant nutrition products that target soil enrichment, is …
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How Filamentous Fungi Sense Food
… and decide on the order in which this fungus breaks down plant cell wall materials including lignin, cellulose and … for filamentous fungi, all of which contain a wide array of plant cell-wall degrading enzymes (PCWDEs) that allow them … enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was also provided …
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