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The More the Merrier: Making the Case for Plant Pan-genomes
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … whole complex of progenitors and descendant species and, consequently, the evolution of polyploidy.” Evaluating …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by … degrade the plant biomass. In order to learn more about these regulatory networks in the model fungus  N. … under US Department of Energy Contract DE-AC02-05CH11231, a Joint Genome Institute Community Science Program …
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You Can Move, But You Can’t Hide
… identify mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are genetic … biogeochemical cycles around them. By understanding more about the genomics of MGEs and their evolution at the … User Facilities operated under Contract No. DE-AC02-05CH11231. This work also received support from the Genomic …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… and what escapes to the atmosphere in the form of greenhouse gases (e.g., carbon dioxide, methane, and nitrous … enzymes in the soil and who made them. Based on data reported in the April issue of Soil Biology and Biochemistry … than expected. The transcriptome data had suggested about a 50/50 split between fungal and bacterial enzymes. …
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Better Genome Editing for Bioenergy
… of the genes in a lipid-prolific yeast. The Impact The team used this set of guide RNAs on  Yarrowia lipolytica to … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica … Facility, is supported under Contract No.  DE-AC02-05CH11231 . …
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ZW sex chromosome structure in Amborella trichopoda
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Metagenomic Sequencing of Two Salton Sea Microbiomes
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Rapid Kinetic Characterization of Glycosyl Hydrolases Based on Oxime Derivatization and Nanostructure-Initiator Mass Spectrometry (NIMS)
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Calculating the Costs of Multiple Switchgrass Gene Copies
… team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered … to address long-standing evolutionary ecological hypotheses about how C4 perennial grasses like switchgrass respond to …
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Finding the Fermenters
… of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… (UC), Berkeley, UC Agriculture and Natural Resources (ANR), US Department of Agriculture P­­lant Gene Expression Center, … and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … by the Office of Science of the DOE Contract DE-AC02-05CH11231. D.P. is supported in part by the Berkeley Fellowship …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… established and emerging scientists from academia, industry, and government organizations for three days of … discussions, workshops, and informal networking events. JGI will present both a genome center talk and a tech talk. Stop by the JGI booth to learn about our user programs and how we can help advance your …
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