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De novo DNA synthesis using polymerase-nucleotide conjugates
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… The disease is known more commonly as Sudden Oak Death or by its acronym, SOD. Of the dozens of Phytophthora species, … pathogen and trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US … pathogenesis . Science. 2006 Sep 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News of the Day: Stokstad E. …
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An Automated Tool for Assessing Virus Data Quality
… as carbon, nitrogen and sulfur are themselves regulated by viruses in their environments. Environmental DNA … Biotechnology , a team from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of …
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The More the Merrier: Making the Case for Plant Pan-genomes
… traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to … Universidad de Zaragoza and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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JGI@25: The Little Alga That Could
… 7,000 genes with other organisms (a third of those shared by both humans and flowering plants). Its genome also … specific algae. The reference genome is cited in roughly 10% of all since-released publications on green algae. “The … new Chlamydomonas genome-related Community Science Program projects of all kinds,” noted Igor Grigoriev, head of the …
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JGI announces 2024 New Investigator portfolio
… That’s why each year we look for novel research projects — aligned with DOE missions and from PIs who have not led any …  resources, these researchers will dive into a range of projects spanning the resilience of desert grasslands to the …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… analysis of microbial, fungal, and plant research projects.  More recently, these long-reads have been applied … PacBio? A(nswer):  Regular PacBio typically requires ~ 1.5-10 ㎍. Low-input protocols are continuously improved, but … the standard analysis pipeline but can be done on request by the PI. We currently use the ‘Base Modification Analysis’ …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… measuring cyclic di-GMP in bacteria through work enabled by the JGI’s Community Science Program (CSP) . The Impact … at the University of California, Berkeley and the Joint Genome Institute, a DOE Office of Science User Facility, built a … by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of …
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Exploring the roles of microbes in facilitating plant adaptation to climate change
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Local adaptation to climate has facilitated the global invasion of cheatgrass
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JGI Early Career Researchers Featured in mSystems Special Issue
… global ecological and environmental processes, especially by modifying host cell metabolism and altering cell fitness. … Berkeley National Laboratory (Berkeley Lab). JGI is a DOE Office of Science user facility at Berkeley Lab.   … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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The fungus that made itself at home
… lacrymans adapted to a new ecological habitat. The Science By comparing genetic information from similar organisms, … of Oslo scientists and including researchers at the Joint Genome Institute, a DOE Office of Science User Facility, compared the genomes of … This research was supported by the University of Oslo and Norwegian Research …
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