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A Bioinformatician's Guide to Metagenomics
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Behind the Paper: Hot Springs Metagenomics
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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How to Target a Microbial Needle within a Community Haystack
… The Impact Despite great strides in generating genome sequences for members of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … microbes within metagenome samples and associate their sequences with their roles within their environments. …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… shrubby grass that can grow year-over-year on marginal soil and with few resources. Despite the low maintenance, it … candidate bioenergy feedstock crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a … of Texas at Austin produced a high-quality reference sequence of the complex switchgrass genome. The reference …
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JGI Accepts 17 Proposals for Community Science Program
… interact with their environment, potentially accelerating soil carbon loss. Orange ribbons mark the heated plots and … collaboration that produced the reference genome sequence for Eucalyptus grandis. Accessing recently burned soils in California and Colorado, Mike Wilkins of Colorado …
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Nikos Kyrpides
… for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined … (2023) Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. … Giant virus diversity and host interactions through global metagenomics. Nature . 578:432-436 Roux S. et al. 2019. …
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Mediterranean grassland soil C–N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms
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Soil exchange rates of COS and CO18O differ with the diversity of microbial communities and their carbonic anhydrase enzymes
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The Tale of a Neglected Energy Source: Elevated Hydrogen Exposure Affects both Microbial Diversity and Function in Soil
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Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil
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Biogeography and organic matter removal shape long-term effects of timber harvesting on forest soil microbial communities
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