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A Grass Model to Help Improve Giant Miscanthus
… the perennial grass Miscanthus sinensis has been published. Analysis of the genome sequence also provides insights into … chromosomes of Miscanthus arose by ancient hybridization (polyploidy) and insights into the dynamics of gene … crops such as sugarcane and sorghum. The M. sinensis genome analysis explains the hybrid origin of giant miscanthus ( M. …
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CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg … (Danforth Center) drove up and down the highways of the continental United States, occasionally pulling over to the … a very high quality reference S. viridis genome sequence. Analysis of these plant genome sequences also led …
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Dan Rokhsar
… JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful … AB in Physics, Princeton University, NJ MS in Theoretical Physics, Cornell …
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Genome analysis of ‘Candidatus Ancillula trichonymphae’, first representative of a deep‐branching clade of Bifidobacteriales, strengthens evidence for convergent evolution in flagellate endosymbionts
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with … a  few years ago, researchers can request quantitative SIP analysis as a capability in proposal calls to the U.S. … this was the first workshop of its kind on SIP metagenomics,” Malmstrom said.  Increasingly, efforts like these …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… winter scenes that came with crayons in various shades of white. To researchers searching for sequences of RNA viruses … viral diversity. “Although the technical challenges of data analysis at this scale are formidable.” Computational Sieves … analyses – as best we could, we tried to describe the protein domains every virus carries, and who is their likely …
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Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities
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In Silico Analysis of the Metabolic Potential and Niche Specialization of Candidate Phylum "Latescibacteria" (WS3)
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Metatranscriptomic analysis of lignocellulolytic microbial communities involved in high-solids decomposition of rice straw
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Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus
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Genome-wide analysis of cytochrome P450s of Trichoderma spp.: annotation and evolutionary relationships
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