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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex wiring behind a city’s power grid. Just as the flow … of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… Program was brimming with excitement and determination as they came onsite. From data carpentry to science communications, their schedules were filled with trainings … Study of Root Colonization by Resident Phages of a Plant Growth Promoting Rhizobacterium Graduate Interns Tahirah …
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Crysten Blaby-Haas
… University of Florida, working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in bacteria … hypotheses. From 2011 – 2015, she worked with Sabeeha Merchant at UCLA as a NIH Ruth L. Kirschstein National Research … – present Alumni Award, MCS, University of Florida, 2024 Congressional Recognition, Women’s Services Honoree, 2022 …
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Micro-Scale Applications Group
… The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our … the quality of single-cell genomes and directly link functional information with individual cells. Research Team    …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of … T, C and G appearing over and over in a dizzying array of combinations, are unremarkable, save perhaps for the absence … species to answer questions about how they break down plant materials, which could be useful for industrial biofuel …
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Sequencing Submission Requirements for DNA Synthesis
… Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. … source desktop application written by M. Wayne Davis or commercial options include SnapGene . …
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Outreach Stories
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All Events
… The JGI is represented at conferences year round; find out where our researchers will be presenting next. Learn about upcoming user-focused webinars and workshops we're hosting. …
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Leadership
… This group is responsible for institutional strategic planning, talent management, and convening of advisory committees to guide the direction of programs and …
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Ancient Algae Reveal Secrets of Plant Evolution
… Research uncovers the genetic foundations that helped plants conquer land over 600 million years … tolerance and multicellularity enabled plants to develop complex structures and adapt to changing environments — … Research Enhancement Funds as part of a startup grant of the University of Nebraska Lincoln, the Research & …
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Taking Stock of the Known and Unknown Microbial Space
… have led to an abundance of microbial genomes becoming available to the global research community.  … of Science User Facility located at Lawrence Berkeley National Laboratory Berkeley Lab), have taken stock of the … Ivanova leads the Functional Annotation team. MAGs significantly expanded the estimated diversity of Bacteria and …
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Plant Microbial Interactions Group
… Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated … Plant microbiomes hold the amazing ability to influence plant … whereby they can modulate host metabolism, gene expression and phenotype. We have recently identified resident …
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