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Proposals aim to sequence and annotate genomes from Antarctica to Africa to global oceans. Through … Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted from 70 full … said Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize …

Merced. What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 … position with the Plant and Microbe Interaction group at Oak Ridge National Laboratory, he has started a new position as the Senior Manager, Machine Learning at …

… for the design and maintenance of the Integrated Microbial Genomes (IMG) data warehouse, and integration of genomic and …

… summer, they worked with Zhong Wang’s and Tanja Woyke’s groups, respectively. Each of the interns spoke briefly … summer were: Rida Ali, who worked with T.B.K. Reddy on the Genomes OnLine Database; Sarah Fruchart , who worked with … Matt Blow; Sean Bray , who also worked with Zhong Wang’s group on an aspect of the same project assigned to Sharon …

… algorithm — a convolutional neural network, called  ResNet 34   — in order to vectorize protein sequences. Sevim is part … Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew Tritt of CRD and, independently, Ying … chromosomal sequences in mixed-genome samples) with a new tool called MetaGNN (Prashant Pandey of CRD). The …

… that led to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples around the … Program, and already available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Nikos …

… calling, functional annotation and methylomics) that run on microbial genomes and metagenomes. He also works on automating intra-department data …

… dedication event of the Integrative Genomics Building—the new home of the JGI and KBase in the heart of the Lab’s … and the launching of a Secondary Metabolites research group (pages 47-49). “Our hope is to circulate this document widely …

In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer … processes. A third approach steps away from reconstructing genomes directly from the environment and focuses on … sequence reads to link mobile elements such as plasmids to microbial host cells. In a separate article, research …