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JGI@25: Using Team Science to Build Communities Around Data
… at over 180 organizations in 29 U.S. states and 35 countries. (Graphic: Neil Byers) The JGI launched the … for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … at over 180 organizations in 29 U.S. states and 35 countries. Of the 85 proposal collaborators, 58 had never …
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Mindfully Moving JGI
… unneeded chemicals, unopened lab consumables, unneeded Lab tagged equipment, recyclables, and general waste that would … filled nearly 24 speedpaks, and more than half of them were tagged for waste streams other than the landfill. Naca added … you’re diverting waste appropriately and a certain percentage of it is going everywhere except landfill.” At each …
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JGI@25: Studying Sorghum’s Survival Skills
… reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have cited that genome. Since publishing that … use whole-genome shotgun sequencing to analyze the 730-megabase Sorghum bicolor (L.) Moench genome. Sorghum was …
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Cultivating Symbiotic Antarctic Microbes
… consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … outlined by JGI scientists and their collaborators in 2013. While most DPANN lineages are predicted symbionts, the … suggested the Nha-C cells were interacting with another abundant species in the enrichment cultures,  Hrr. lacusprofundi …
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The More the Merrier: Making the Case for Plant Pan-genomes
… genomically the whole complex of progenitors and descendant species and, consequently, the evolution of … made  B. distachyon pan-genome. A pan-genome is the nonredundant set of genes found in a species, but in this case, the … are all available on the JGI’s plant portal  Phytozome v13 . Researchers from the following institutions were also …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… drought condition, no water was given during weeks 3 to 8 before flowering. In the post-flowering period … and E.P.); Gordon and Betty Moore Foundation Grant GBMF3834 and Alfred P. Sloan Foundation Grant 2013-10-27 (to the …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
Patterns of Adaptive Evolution . Mol Biol Evol. 2022 Feb 3;39(2):msab372.doi: 10.1093/molbev/msab372.   Byline: Ashleigh Papp …
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Calculating the Costs of Multiple Switchgrass Gene Copies
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… to  Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the entirety of a microbial community … from different phyla are capable of methanogenesis. Using metagenomics eliminates confirmation bias, because it enables …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
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SPRUCE-ing Up Science
… like Minnesota for example, despite taking up only about 3% of the planet’s landmass, peat moss and their subsurface bogs hold over 30% of the world’s carbon. “This makes it one of the most … Lawrence embarked on his PhD program at UC Merced in 2013, this field was just beginning to develop and expand into …
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Scaling Up Existing Skill Sets
… tangible to offer.       Name: Ricky Yan   Class Year: 3rd year undergraduate student Mentor: Zhong Wang, Genome …
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