Results

JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data …
Learn more
Applying Viral Genomics Expertise to Understanding the Human Virome
… the microbes in and on humans shape our health. A total of 16 projects have been approved, divided among the following … CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , … prediction for metagenome-derived viruses of archaea and bacteria ( PLoS Biol , 2023). These tools have significantly …
Learn more
Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
Learn more
IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
Learn more
Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains
Learn more
In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
Learn more
JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
Learn more
Forming Scientific Connections and Building Community
… “ Exploring the epigenetic basis of pathogenicity in bacteria” Erika Maquiling : “Being a JGI intern means going … Malmstrom, Nandita Nath & W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan …
Learn more
Yasuo Yoshikuni
… of secondary metabolite biosynthetic gene clusters in bacteria, Cell Chemical Biology , 2022 … R&D100 Award …
Learn more
JGI Announces 2023 Community Science Program Awardees
Learn more
2021 JGI Proposal Call Brings New Investigators into Community Science Program
… resulting from 95 letters of intent. For the first time, 63 percent of the accepted proposals come from investigators … proposal includes plans to sequence several thousand Actinobacteria strains and then use computational tools to analyze … in sequencing secondary metabolite-producing environmental bacteria from the Tiny Earth collection. The work builds …
Learn more
Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of … with various origins, ranging from fungi, plants to bacteria. Back in 2011 when these genome and transcriptome … data were generated, bioinformatic tools for binning metagenome data involved with mainly eukaryotic origins were …
Learn more