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Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions
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IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
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Learning to Look
… a computer could use to conduct a similar type of search in microbial and metagenomic databases. In this case, the … Simon Roux, a JGI research scientist in the  Environmental Genomics group . Training the Search Tool Inoviruses are … with nearly all bacterial phyla across virtually every ecosystem.” By significantly expanding the known diversity …
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JGI announces 2023 CSP Functional Genomics awardees
… the JGI accepts proposals for state-of-the-art functional genomics research from potential users who need help … into biological function. Through our CSP Functional Genomics call , we look for projects that will leverage the …
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JGI@25: Solving the Mystery of the Missing Oil
… Berkeley Lab. Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed in … also helped track and characterize the shifting waves of microbial communities involved in removing different … developing models for cellular properties, communities and ecosystems.” Building off multiple collaborations, Lab …
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Nigel Mouncey
… biology. Dr. Mouncey has a long-standing interest in microbial genetics that started with his education and … Jensen, R. O. et al. 2024. Phylogenomics and genetic analysis of solvent-producing … of Actinobacteria with 824 Isolate Reference Genomes. Cell Genomics 2: 100213 Nayfach S et al. 2021. A genomic catalog …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… to support a forest, and species vary across Earth’s ecosystems.  Recently, in work  published in  New … fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved … speaker at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & Environment Meeting, to be held in …
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… Berkeley National Laboratory (Berkeley Lab), to help drive discoveries that will render new economic advantages for … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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Genome‐wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon
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JGI announces final round of 2022 Functional Genomics awardees
… the JGI accepts proposals for state-of-the-art functional genomics research from potential users who need help … into biological function. Through our CSP Functional Genomics call , we look for projects that will leverage the …
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Trent Northen
… advanced mass spectrometry approaches and model laboratory ecosystems (EcoFABs). … microbiome science through standardized fabricated ecosystems. Nature Methods (16), 567–571 (2019) doi: … serves as the Deputy Director of the Environmental Genomics and Systems Biology at Lawrence Berkeley National …
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