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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito Maruyama, Lauren Stadler, Tingting Xiang and Sheree Yao. ] ] The JGI welcomed 14 scientists selected for our 2026 Community Science Program Large Scale call. … enzymes discovered in extreme environments to engineered microbiomes that accelerate biomass processing. This year’s …
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Webinar: SIP technologies at EMSL and JGI
… microbes assimilating labeled compounds. During this webinar, EMSL’s Mary Lipton and the JGI’s Rex Malmstrom … from the Webinar: 1. Q(uestion): How much DNA is required for the JGI SIP metagenomics pipeline? A(nswer):  The more … time has been impacted by the pandemic. 3. Q: What instrument / method does the JGI use to pre-screen DNA for …
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Evolution of a Fungal Gene Expression Regulator
… ways to protect poplar and other crops being considered for bioenergy feedstock development. Summary With the aim of producing at least one reference genome for every family of fungi, the 1000 Fungal … unwrapping complex mechanisms of genome-wide regulation and cataloging them in JGI’s fungal portal MycoCosm. …
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Honey Bee Gut Microbiota Divvy Up Dinner
… in the next generation of flowering vegetation. In return for their services, bees eat plant nectar and pollen. Nectar … bacterial clades shared between honey bee and bumblebee gut microbiomes. Researchers found that pollen’s pectin and … are degraded mainly by just two clades:  Gilliamella,  which mostly resides in the bee’s ileum, a structure …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… to spread across most of the plant’s ecosystems. The Impact For decades, the liverwort  M. polymorpha has been used as a … . The comparative framework provided by these high quality reference genome sequences could help researchers better … encompass a plant’s genetic diversity beyond a single reference genome, which is key to understanding its full …
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Katherine Louie
… to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D efforts to expand the metabolomics capabilities and product … al. Mass Spectrometry for Natural Product Discovery. 2020.  Reference Module in Chemistry, Molecular Sciences and …
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Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber
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Graduate Students Get Thesis Research Opportunity at the JGI
… to answer our most pressing problems. I’m very much looking forward to working with JGI and LBNL scientists and have … Lab is the home to an exceptional caliber of scientists.” For her project, “Microbial Community Structure and Methane … and the interactions of plants with their associated microbiomes. Tringe was also Kaze’s mentor during her 2018 …
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iPHoP: A Matchmaker for Phages and their Hosts
… be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these hosts are microbes like … researchers have found more of these viruses than ever before, in all kinds of ecosystems. However, matching these … it predicted many more likely hosts for viruses in human microbiome samples, reflecting factors such as the quality …
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Axel Visel
… the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and … in Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis in … novel computational and experimental sequence-based methods for elucidating the gene regulatory landscape of vertebrate …
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2022 Progress Report
… the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science Program (CSP) Applications Webinar inviting researchers to submit white papers to the … the data and work with the data. Q: How would you include a reference or citation in a proposal? A: If you’re presenting …
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