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Introducing New Members of the JGI User Executive Committee
… reasons for wanting to serve on the UEC. Hatzenpichler, who studies sediment-dwelling archaea, expressed his interest in … exist on [the JGI data portal] IMG or how to deal with situations in which they inadvertently analyzed use-restricted data without contacting the lab that generated that data,” he …
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MGM Workshop at Fisabio Summer School
… research results in genomics, metagenomics and the human microbiome. The workshop will train participants in …
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Enlarging Windows into Understanding Gene Functions
… workflow that reduces the time and cost associated with this purification step, and Baumgart continued and … from either genomic DNA or complementary DNA (cDNA), reducing the amount of time it takes to produce a dataset …
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Triggering Morel Fruiting
… the fruiting-related decomposition mechanisms of morel with multi-omic approaches, our results revealed a striking … and to incorporate the assimilated carbon into the soil, reducing the amount of CO2 emissions from decaying leaves … the key physiological factors that trigger forest mushrooms with diverse trophic modes to convert from vegetative …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have … , diversity exists in infectious cycles, as well, with viruses relying on different strategies for initiation, … to highlighting many viruses simultaneously, these genomic studies provide information about virus hosts. As a result, …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… M. polymorpha has been used as a model for evolutionary studies. Its place among early-diverging plant lineages … a resource that associates plant’s genetic variants with specific adaptation mechanisms they had identified. For … and later plant lineages that independently expanded. Along with NLRs, the diversified peroxidases are associated with …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… our  2022 Annual Meeting . The meeting was a hybrid event, with guests joining onsite at the Integrative Genomics … interest in how this technology could be applied to curbing methane emissions of livestock. Currently, adjusting the … Weizmann Institute of Science in Rehovot, Israel, where he studies single-celled algae in the ocean. “Although …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… that supports “an unprecedented assembly of environmental microbiomes.” JGI’s Chief Informatics Officer  Kjiersten … multi-terabyte datasets assembled for the first time with  MetaHipMer , taking advantage of scalable parallel …
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2023 Progress Report
… expertise to support the global research community in studies of complex biological and environmental systems. We …
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When “The Blob” Made It Hotter Under the Water
… carbon from the atmosphere and keeps it in the deep ocean. With genomic samples collected before, during and after The … are affected by warming events. More time-series studies could help researchers improve predictive models on … organic matter scavengers. This preliminary model aligns with several other studies on the potential effects of …
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Fungus Fuels Tree Growth
… root cells. The fungus is almost always found among and within poplar trees, and in an effort to understand its … how poplar responds to its intimate associations with endophytes — a group whose effects on plants are still … fine-tune their engineering efforts of both plants and root microbiomes to grow energy crops more efficiently. Summary …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with … involved in capsid maturation. Recently reported in  Microbiome , researchers from the US Department of Energy …
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