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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and … life cycle. For example, in the fall the plants store nitrogen in its rhizomes – in the form of the nitrogen-rich …
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Busting the Unbreakable Lignin
New evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main ingredients to tackle when it comes to breaking down a …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida high school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and … life cycle. For example, in the fall the plants store nitrogen in its rhizomes – in the form of the nitrogen-rich …
Learn more
Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help … host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … relationships, but not all plants and fungi can form such symbiotic partnerships. To learn more about these other …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and … The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … understanding their impact on wider ecosystems, but these symbiotic interactions are difficult to study in the lab. …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … pools before being subjected to genome sequencing. Various fixation protocols were also tested as part of the method …
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The … T or G in a genome sequence can lead to changes in protein structures and functions, but the DNA bases themselves can …
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A Community Resource for Secondary Metabolite Researchers
Collaboratory encourages user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … away in wood, converting it into their own carbon-rich structures, as well as atmospheric carbon dioxide.  Summary …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address … seedlings grown in a controlled environment chamber, so the fungus could colonize the plants’ roots. Then, comparing …
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