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A korarchaeal genome reveals insights into the evolution of the Archaea
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Murine colitis reveals a disease-associated bacteriophage community
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Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: A genome and transcriptome approach
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Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis
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Homoeolog expression divergence contributes to time of day changes in transcriptomic and glucosinolate responses to prolonged water limitation in Brassica napus
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Laminarin stimulates single cell rates of sulfate reduction whereas oxygen inhibits transcriptomic activity in coastal marine sediment
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JGIota: Looking Back at Sequencing for Soybeans
The soybean is a crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped … have been able to look into soybean’s strengths – along with a fungus that threatens this important crop. Hear … about that work from researchers Gary Stacey (University of Missouri), Peter van Esse (The Sainsbury Laboratory) and …
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Katherine Louie
… efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … samples in support of user science.  Capabilities offered by the platform are a result of Dr. Louie’s establishment of … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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New Research Sheds Light on Diversity in the Deep Sea
… get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. … Summary Hydrothermal vents are typically found along mid-ocean ridges where tectonic plates pull apart. As … biofuel production and more. … This work was funded by the US-National Science Foundation grants OCE-0728391, …
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Transcriptomic and genomic effects of gamma-radiation exposure on strains of the black yeast Exophiala dermatitidis evolved to display increased ionizing radiation resistance
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Micro-Scale Applications Group
Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new … that allow us to select specific uncultivated microbes for sequencing based on their level of metabolic activity …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a … scientists to study microorganisms that can’t be cultured by analyzing and then extrapolating data obtained from … by many, many scientists.”  Using samples of rumen-digested switchgrass, researchers isolated and sequenced DNA from …
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