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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions are available) … (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … directly measure environmental or biological samples (like cell media or lake water) without doing a metabolite …
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Busting the Unbreakable Lignin
… New evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main … tackle when it comes to breaking down a plant for energy: Cellulose, hemicellulose and lignin, cumulatively called lignocellulose, … The authors acknowledge their funding sources: Office of Biological and Environmental Research of the U.S. …
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Searching for new branches on the tree of life
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Improving the Cacao Genome and Phytozome
… Cocoa Organization (ICCO), global cocoa bean production in 2017-2018  was 4.6 million metric tons . The global … fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest buyers of cocoa, is collaborating …
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Webinars on Offerings & Capabilities
… Below are a list of webinars that can help you through the submission process …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … plants (endophytes). These include genes that degrade plant cell walls and break down plant sugars. The results also … and can efficiently colonize roots by degrading the plant cell wall component pectin. The results therefore predicted …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the bench to … a DOE Office of Science User Facility. This year, the 12th JGI-UC Merced cohort consisted of three undergraduate … Kelly Mentors: Kyra Eyerman, Hualan Liu Project:  Promoter Characterization of the Bacillota Bacterial Phylum Saray …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 … saprotrophs in the forest. White rot can break down the cellulose, hemicellulose, and lignin in plant cell walls, … This research was also supported by the Laboratory of Excellence ARBRE (ANR-11-LABX-0002-01), the Region Lorraine, …
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Integrating Experimentation with Data
…                   General attendees: $500     Students: $200      Postdocs: $250     Industry: $700    Thanks for joining the Joint … The JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user … to cutting-edge capabilities for omics-based and analytical characterization, imaging, and visualization, through a …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … from around the world. By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 … decomposers that can break down all of wood’s components — cellulose, hemicellulose, and the toughest molecule, lignin. …
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Towards a balanced view of the bacterial tree of life
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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. … microbes, hosts, and their environments could be applied to multiple research areas including agriculture, biofuels and …
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