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Extreme Scale De Novo Metagenome Assembly
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Visualizing metagenomic and metatranscriptomic data: A comprehensive review
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Metagenomic Sequencing of Two Salton Sea Microbiomes
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SPRUCE-ing Up Science
… his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. … the inevitable questions about the study’s methods and analysis, Lawrence is spending time on the graphics that … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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An Integrated Dataset to Understand Ecosystem Interaction
… data set will help identify how different elements of the ecosystem interact and respond to changes in the … is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization were provided by the U.S. … Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …
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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The … genomes, researchers were able to carry out a broader analysis than had ever been done before to look at how …
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JGI Early Career Researchers Featured in mSystems Special Issue
In a special issue of mSystems , out May 14, 2019, JGI researchers are among … has advanced drastically, aided by genome assembly from metagenomes. This is a critical step toward better … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Understanding Wildfire Recovery, Starting in Soil
… begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … fungi, bacteria and viruses survive. With this metagenomic analysis, it was possible to identify specific attributes — … … This work was supported through a USDA NIFA award (2021-67019-34608) to M.J.W. FTICR-MS analyses were performed …
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Complete Genome Sequence of Nitrobacter hamburgensis X14 and Comparative Genomic Analysis of Species within the Genus Nitrobacter▿ †
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Examining the cause of high inbreeding depression: analysis of whole‐genome sequence data in 28 selfed progeny of Eucalyptus grandis
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Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.)
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Analysis of Porphyra Membrane Transporters Demonstrates Gene Transfer among Photosynthetic Eukaryotes and Numerous Sodium-Coupled Transport Systems      
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