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… collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … applications in many fields. The team discovered that rampant horizontal gene transfer and frequent gene loss shape … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …

… of the 2023 cohort. Each of them has brought invaluable insights, thoughts, and explorations that has led to … on the past decade and shared favorite memories in a panel discussion.  Suzanne Sindi , a program cofounder and … part that was the most rewarding of all the work that went into this program was the feedback from the graduate student …

… single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant … assembly. Integration of this type of “external mapping” into IMG is currently being revamped but we can already … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … “Currently, this is the largest JGI-sequenced fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics … found in soil samples, and assembled those RNA transcripts into a metatranscriptome. Overall, they found that despite …

… Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & …

… to Antarctic valleys, these organisms have diversified into an estimated 2–6 million species — dwarfing the … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … Project established crucial phylogenetic frameworks spanning the entire kingdom. Stephen Mondo, a research …

… juniors who participated in internships at the DOE Joint Genome Institute this summer through the Biotech Partners … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. …

… website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for over 5 years, provides users with the genome browsers, gene pages, search, BLAST and BioMart data …