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MGM Workshop at Fisabio Summer School 2025
Register here The workshop is addressed to students and professionals of biology, biomedical research, the health … of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by Natalia Ivanova and Rekha Seshadri. …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … Photobiont and fungus (mycobiont) live intertwined, with the photobiont transferring part of its …
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2024 Progress Report
… (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the … April 2024 — through serving an increased number of users with a record output of products, making data easier to … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the … and characterize viral diversity, understand the role of viruses in natural ecosystems, and functionally explore …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground …
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JGI & KBase at PAG XXVII
The Plant and Animal Genome XXVII Conference (PAG) takes place … (KBase) will be at Booth 509. Stop by and chat with representatives from KBase and the JGI about … your plant genomics research. Click here to download a list of talks relevant to JGI science at PAG XXVII. On January …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis group. He … Free-Living Growth and during Nitrogen-Fixing Symbiosis with  Medicago spp. Msystems 7 (1), e01092-21 3. Baumgart et … board member for Scientific Reports … Education … Selected Publications … Awards and Service …
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Polar Phytoplankton Need Zinc to Cope with the Cold
Antarctic algae need their vitamins; zinc fuels some of … what makes polar photosynthesizers tick. He’s working with researchers at the U.S. Department of Energy (DOE) … the green alga Microglena sp. YARC, which also contains expanded genes for proteins requiring zinc. Co-expression …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
SIP experiments shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene … of the microbial communities in the environmental samples without needing to isolate individual organisms, using … team on predicting host-virus connections between all viruses in  IMG/VR (Virus) and the GEM catalog, associating …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
With a new methodology, scientists are now getting more … from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a … majors at CSU-San Marcos. That course has since expanded into three other universities. You can learn more …
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