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A Complex Confection Decoded: Sugarcane Reference Genome
… genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the … most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … in  Nature by an international consortium. With the genetic code of sugarcane, researchers were able to map the …
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Gut Fungi: Unexpected Source of Novel Chemicals
The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … four anaerobic fungal species has revealed, for the first time, that this group is unexpectedly powerful: they can … fungal natural products, O’Malley and her team plan to use genetic tools to boost production and isolate the compounds. …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
For the first time, a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … impact the planet’s nutrient cycles. While most organism’s genetic information is encoded in DNA, with RNA delivering … to address some of the most pressing challenges of our time. For more information, please visit  …
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Expanding Virophage Diversity
… are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … wastewater, and even animal and human (for the first time) gut and taxonomically classified into 27 distinct …
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Rex Malmstrom
Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI … isolating individual bacterial cells and amplifying their genetic material, thus bypassing the need to culture these … dissertation in life sciences 2006 … Education … Selected Publications … Awards and Honors …
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JGI Early Career Researchers Featured in mSystems Special Issue
In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives on what the next five years of innovation … uncovering giant virus sequences in soil for the first time. A second approach known as DNA stable isotope probing …
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Polar Phytoplankton Need Zinc to Cope with the Cold
Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even … microalga: the diatom Fragilariopsis cylindrus . At that time, they noted that the F. cylindrus genome encoded more …
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NeLLi — Symposium on New Lineages of Life
The DOE Joint Genome Institute hosted the hybrid “NeLLi 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the … to a new appreciation for the extent of diversity. The phylogenetic and functional characterization of this novel …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a … and a specific microbial host to replicate. Sequencing genetic material directly from samples sidesteps these … million viral genomes, and  this most recent version is six times larger than the previous one . To identify so many …
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Genome-Resolved Meta-Omics Ties Microbial Dynamics to Process Performance in Biotechnology for Thiocyanate Degradation
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A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria
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