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Evolution of a Fungal Gene Expression Regulator
… date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome sequence can … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like … technologies for producing both reference genomes and epigenomics, researchers are unwrapping complex mechanisms of …
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Soil virus offers insight into maintaining microorganisms
… identified a virus protein tied to carbon cycling.  The Science Through a collaborative effort, researchers have … of crystalized samples cloned and synthesized by the JGI, scientists have begun the complex process of uncovering the … second only to cellulose.  Chitin is also a common food source for microbes living within soil. So, the chitosanase …
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Coupled laboratory and field investigations resolve microbial interactions that underpin persistence in hydraulically fractured shales
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Decoding Yellowstone’s Microbial Mats
… began oxygenating Earth over two billion years ago. A team of researchers set out to Yellowstone National Park to study how cyanobacteria are living, communally, in microbial mats. Along the way, they’ve encountered … new technologies, and made a few discoveries about the microbial mat denizens.  …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and the Innovative Genomics Institute.  The Science Researchers report the discovery of miniature … of thermostable Cas9 genes . The work also used resources at the National Energy Research Scientific Computing …
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Digging into Microbial Ecosystems Deep Underground
… deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re … recently published paper with first author Amundson in the journal Microbiome . The work builds off a proposal approved through a collaborative science initiative called Facilities Integrating …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… bioeconomy, including, potentially, methane as an energy source.  Until recently, our understanding of these … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of a microbial community out in its natural environment, scientists have shown at least two microorganisms from …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision The …
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Genome of the Root-Associated Plant Growth-Promoting Bacterium Variovorax paradoxus Strain EPS
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Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis
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Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome
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The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants
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