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Ancient Algae Reveal Secrets of Plant Evolution
… land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  … and by the German Research Foundation grant 440231723 (VR 132/4-1) to J.d.V., TH417/12-1 to G.T. and F.R., and … to Land: Plant Evolution to Change’ (SPP 2237), and grant 410739858 in the frame of the project CharMod to K.v.S., as …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … to more sustainable energy production.  However, less than 10% of the microbes found in any environment can be grown in …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … across the species. These are primarily tetraploids (4X or four copies of the genome) and octoploids (8X or eight … (in this case, a plant’s complete genetic makeup) and 10 common gardens. We discovered that 8X populations have …
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User Support Analysis Group
We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis …
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Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon into soil and boosting biofuel … to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to better …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help … toward filling gaps on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled … . They looked for genes known to be involved in fungal-host interactions and identified 84 gene families that were …
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Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton
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Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses
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Introducing New Members of the JGI User Executive Committee
… – Jack Gilbert, Ashley Shade, and Jason Stajich! They join six other JGI users already serving on the UEC – go here to view the full roster of members. … Each of the researchers had their own reasons for wishing to serve on the UEC. For microbial ecologist Gilbert at …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and present-day … thus allowing them to spread across most of the plant’s ecosystems. The Impact For decades, the liverwort  M. … grants from the Swiss National Science Foundation (160004, 131726), the EU’s Horizon 2020 research and innovation …
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Institutional User Agreements
… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the … with an active JGI User Agreement older than January 2024 will be required to execute a 2024 version .  The recent …
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