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High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. In this role he supervises the Genome Assembly, QA/QC, and … BS in Biochemistry and Biological Chemistry, Nottingham University, UK PhD in Genomics, University of … et al. 2024. scMicrobe PTA: Near Complete Genomes from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. …
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User Executive Committee Charter
… the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their science including technical … is needed, new capabilities desired, or capabilities that could be discontinued; Provide suggestions for session …
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JGI User Executive Committee Expands
… Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … on interactions underlying plant adaptation in different environments. He’s been involved in several plant genome … by providing input on JGI policies and capabilities that affect users. Robinson is a staff scientist at Los …
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Busting the Unbreakable Lignin
… of plant components   The Science There are three main ingredients to tackle when it comes to breaking down a … of hardy cell walls. It’s the cellulose and hemicellulose that eventually yield fuels, and removing lignin in order to … skeleton. It’s more complex, and poisons enzymes and the  microbes that make them. It’s known that aerobic fungi, like …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted … communications, their schedules were filled with trainings that they later reported were incredibly valuable to their … Tomas Tyml and Frederik Schulz, Eukaryotes in Extreme Environments Theo Loreaux and mentors Simon Roux and …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly modify diverse bacterial … advantage of their joint metabolisms. Because, together, microbes can be used to create compounds more efficiently …
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Mindfully Moving JGI
… JGI is in the process of shifting its operations from Walnut Creek … sequencing machines at maximum) maintained by a workforce that numbered more than 100 at its peak, all the machines … JGI’s Operations Deputy Ray Turner. How extensive? Consider that the process of moving 250 people and their equipment …
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in the evolution and … of land plants and evolved in early microbial biocrust environments.     …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… Researchers from the JGI recognized for their “significant influence in their chosen field or fields through the … Ivanova and Simon Roux, along with data from a consortium that included Susannah Tringe and Tanja Woyke, were all … the study highlights the vast functional diversity of microbes by looking at protein function within them. …
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