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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… reference DNA viruses and 264,413 computationally identified viral contigs. Since then, IMG/VR has grown … version is six times larger than the previous one . To identify so many genomes, JGI researcher Antonio Camargo … and can inform on how this can be done” Roux said. And in just 6 years, IMG/VR has built a foundation for finding more …
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The Expanding Universe of Methane Metabolisms in Archaea
… composition of the Earth’s atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel … and short-chain alkane oxidation metabolisms. They also identified a set of 38 marker genes that serve as a core set of … two metabolic pathways “Up to this point, most phylogenomic trees have relied on only one korarchaeotal representative,” …
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Emiley Eloe-Fadrosh
… from host-associated and environmental samples to identify and characterize genomic information from uncultivated … Nature Microbiol. 1: 15032. Eloe-Fadrosh EA, et al. 2016. Global metagenomic survey reveals a new bacterial candidate … Scholar … LBNL Director’s Award for Exceptional Early Scientific Career Achievement, 2020 NIH Early Career Investigator …
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Game On: High School Students Drive Everglades Metagenomics Study
… to teach a second year A-Level Advanced International Certificate of Education (AICE) Biology class at Florida’s Boca … when they noticed while collecting the samples on canoes just how much change had occurred in this region since the … as a class, the students learned about how to write a scientific paper. They wrote, edited, and rewrote a microbiome …
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Cultivating Symbiotic Antarctic Microbes
… with the humans and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of … was supported by the Australian Research Council (DP150100244) and the Australian Antarctic Science program (project …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… potential of this collaboration stating, “We already identified a lot of synergies. To bring together expertise of … to advance unique scientific knowledge and address global challenges.”  During the workshop UDE and Berkeley … at the University of Duisburg-Essen in Germany in 2024 and 2025.  Participants from the UDE were Alexander …
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Making a Lichen Together
… molecular mechanisms can help researchers better model global carbon and nitrogen cycling. Summary To shed light on … in its progeny. The study’s transcriptomic data also identified many genes potentially important for the symbiosis, … DA, FL, and FD (for bioinformatics) from a DOE grant No 112442 to Pacific Northwest National Laboratory; and by a …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… carbon and nitrogen cycles, break down plant mass (think biofuels ), enhance plant health, cause diseases, and produce … has helped to define the current shape of the microbial tree of life by filling in genomic information for thousands … ( IMG/M ) portal. As part of a comparative analysis, 824 new GEBA-Actino genome sequences were combined with …
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Forest Fungi, Seagrass, and a New View of Symbiosis
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JGI@25: The Little Alga That Could
… in other algae that may be more viable for sustainable biofuel production. The JGI published a partial sequence of … reopened, Merchant would go on to work on research that identified signaling pathways in Chlamydomonas.   So, Merchant … zofingiensis , which has applications in both biofuel and pharmaceuticals. The team at Merchant’s lab also …
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Ian Blaby
… in cyanobacteria Nature Communications 15(1) 3167. 2024 Simirenko et al ., gRNA-SeqRET: a universal tool for …
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Introducing New Members of the JGI User Executive Committee
Research at France’s Centre National de la Recherche Scientifique (CNRS) in October and maintains a lab at Michigan … with new international collaborators and other scientific organizations. Fungal biologist Stajich from UC … access. He aims to be an advocate helping both the scientific and education communities access and build on the …
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