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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… the Environmental Molecular Sciences Laboratory hosted a webinar to showcase how researchers can gain access to the … National Laboratory when applying to the FY2024 EMSL-JGI FICUS collaborative proposal call . Letters of Intent … power of genomics and molecular characterization from the JGI and EMSL in one proposed research project. In the same …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal … and recovered more than 3,000 others from environmental datasets. All of the annotations and data  are publicly … mitochondrial genome into the nuclear genome over time — supporting the notion that the boundary between these two …
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Cultivating Symbiotic Antarctic Microbes
… Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in environmental … and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … Aenigmarchaeota, Nanoarchaeota, and Nanohaloarchaea) superphylum of extremophilic archaea first outlined by JGI …
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Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  Nature …
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User Support Analysis Group
… The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse …
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Supercharging SIP in the Fungal Hyphosphere
… stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have … microbial DNA is manually separated into a few different groups based on its density — DNA containing isotopes is … HT-SIP is a capability available to request through  the JGI proposal calls . …
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial … research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to … microbes and viruses. Prior to joining the JGI, she was a Bioinformatics Program Fellow at the Gordon and Betty …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community … Tips: Contact us with your questions (jgi-jira+pmosup[email protected]) Carefully read our proposal call description … this type of data set. Having a co-PI with complementary skills can show reviewers the team is really able to take …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been … microbes of that lake for over 20 years, to understand how the freshwater ecosystem works.  So a few years ago, when … to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the …
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Len Pennacchio
… on applying state-of-the-art molecular methods to address wide-ranging questions existing in biology. He holds joint … at the DOE Joint Genome Institute, Senior Scientist at Lawrence Berkeley Laboratory, and Adjunct Professor at UC … is funded by DOE and through continued competitive grant support from NIH. …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm plant host … by graduate student Fantin Mesny in Stéphane Hacquard’s group at the Max Planck Institute for Plant Breeding Research … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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