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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The … The battle waged below the Earth’s surface is reconstructed by combining a study of microbial communities … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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How to Target a Microbial Needle within a Community Haystack
… for capturing the genetic make-up of specific uncultivated microbes from complex environmental samples. The … To overcome this hurdle, a team led by Bernhard Fuchs and his postdoctoral researcher Anissa Grieb at the MPI … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Adam Reisselman on being a 2016 DOE Computational Science Graduate Fellow
The Department of Energy's Computational Science Graduate Fellowship (DOE CSGF) program was … Adam Riesselman of Harvard University worked with DOE JGI's Sam Deutsch. Learn more about the DOE Computational Science Graduate …
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Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
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Building Sphagnum Genomic Resources
Sphagnome data would enable researchers’ insights on their potential … carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are … reason, the U.S. Department of Energy is overseeing the SPRUCE (Spruce and Peatland Responses Under Changing …
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MycoCosm Tutorial
Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics datasets, equipped with interactive web-based tools for …
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software … and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well as provide process …
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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … The microbes that play key roles in cycling nutrients such as carbon, nitrogen and sulfur are themselves regulated …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly modify diverse bacterial … versatile engineering system that allows scientists to conduct genome-wide screens and explore biosynthetic pathway. …
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Daniel Udwary
Dr. Udwary serves as a computational biologist for JGI’s Secondary Metabolites group. His … lie in use and development of bioinformatics tools for elucidation of biosynthetic gene clusters in bacteria and …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the … Genome Sequencing Center. Grimwood heads the Library Construction group for the JGI Plant Program . Her collaborations with the JGI began …
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