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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … bases — a terabase — of soil RNA for this project, and produced the reference genomes that allowed for mapping these …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a … and organisms than ever before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida high … own high school biology teacher, who helped connect me with internships and training at the Clorox Company and Lawrence … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … His responsibilities include the development of novel computational tools to identify virus sequences, the design of new … to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization …
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Frederik Schulz
… eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, … to find novel functions that may impact microbiome structure and biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal … the answer provided by Sara 4.  Q(uestion): Are all CSP produced data automatically assembled and run through your … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial … of discovering and modelling complex biological sequences such as biosynthetic gene cluster structures. Zhong Wang, a … Biological and Environmental Research (BER) missions. The JGI provides integrated high-throughput sequencing and …
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating … one of the following focus topic areas: Biofuels and bioproducts, Biogeochemistry, and Inter-organismal interactions. … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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The More the Merrier: Making the Case for Plant Pan-genomes
… merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each … plants multiply. Over time, plants lose many genes after such events, returning their genomes to a diploid state while … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management … second year A-Level Advanced International Certificate of Education (AICE) Biology class at Florida’s Boca Raton … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … called metagenome binning, we were able to reconstruct thousands of metagenome-assembled genomes (MAGs) …
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