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Understanding Wildfire Recovery, Starting in Soil
… a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees … common.  To complete this analysis, a multi-institutional team of researchers collected soil samples from a wildfire … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful …
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Decoding Yellowstone’s Microbial Mats
… cyanobacteria; they began oxygenating Earth over two billion years ago. A team of researchers set out to Yellowstone National Park to study how cyanobacteria are living, …
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Exploring the Diversity of the American Prairie’s Switchgrass
… American prairie, switchgrass ( Panicum virgatum ) has long been a tantalizing potential biofuel feedstock. But … and, as a species, encompasses dizzying diversity. So, a team of scientists made an ambitious plan to begin to link …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with excitement and determination as they came onsite. From data carpentry to science … JGI for me has been definitely the people. For example, my team, the GOLD team and my mentors are very helpful and very …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… its habitat range. But at what cost?  A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… Newly developed chemiluminescent biosensors shed light on how bacteria function and colonize diverse environments. … cyclic di-GMP in bacteria through work enabled by the JGI’s Community Science Program (CSP) . The Impact Cyclic … signal changes in response to the molecule of interest. The team adapted a previously developed combination CSL-BRET …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. … mycorrhizal genomes. With so many fungal  genomes , the team conducted a large-scale comparison, charting several … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. … complex and difficult to sequence and understand. A team of researchers led by Algal Genomics Program lead Igor … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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DAP-seq Drives Robust Mapping of Gene Regulation
… assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes are regulated … Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … TF binding sites are scattered widely across genomes, the team found only a subset were functionally relevant. Those …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … programmatically in a secure and reliable manner. The JGI team managing GOLD already works closely with two other …
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A Complex Confection Decoded: Sugarcane Reference Genome
… work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by tonnage, … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … factories for sugar and biomass. Additionally, the team was able to identify a major locus (Bru1) that durable …
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Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.
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